Huh... now my game won't even go past the title screen. It's stuck in a loop or something. The pendulum swings once and tries to skip to the music/video showing gameplay, then it quits, goes back to the title screen. Repeat.
I wonder if I should just start over.
ETA: I'm thinking it isn't the patch though. Possibly the emulator itself since it's decided it hates all versions of CT. In either case, it ate my files so I'll be starting over anyway.
ETA2: I give up. Tried to patch a new game, tried a newer version of Snes9x, made a little progress but today, getting the same loop problem. I have no idea why I'm failing so hard. It was nice playing though. Hope it turns out better for everyone else.