Oh it's ok, one would think that after all this time both the CE team and SqEnix would be more relaxed about it, but it's completely understandable.
In any case, if anyone's curious, you can still apply the MSU1 patch on CE. I just used Cthulhu's method to be safe which uses a batch file instead of a simple patch, but it's compatible with most if not all hacks/translations. Not gonna post links or anything, Google what you need.
Get the CE Final rom, drag and drop it (make sure it's .sfc) into ExHiROM.bat from Cthulhu's patch, and done